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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Juan Araque | 13th | Xiao-mei Lum | 20th | 14th |
| First Basemen | Jamal Simmons | Tied for 23rd | Jamal Simmons | 27th | 24th |
| Second Basemen | Justin Dixon | 2nd | Justin Dixon | 21st | 3rd |
| Third Basemen | Bobby Banuelos | 20th | Kevin Julien | 24th | 22nd |
| Shortstops | Wonus Hagner | 4th | Eduardo Gomez | 4th | 2nd |
| Left Fielders | Luis Gallardo | 8th | Ryan Welch | 2nd | 6th |
| Center Fielders | Tim Hearn | 22nd | 28th | 28th | |
| Right Fielders | Mitch Delagrange | 5th | Jason Kidwell | 25th | 8th |
| Starting Pitchers | Mike Ortner | 21st | German Pineda | 8th | 20th |
| Relievers | Cameron Calder | 6th | Kenny Poor | 17th | 6th |
| Closers | Willie Arredondo | 24th | Kenny Poor | 1st | 10th |
