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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Justin Biondo | 18th | John Call | 45th | 29th |
| First Basemen | Dustin Walden | 23rd | Luis Miramontes | 1st | 10th |
| Second Basemen | Matthew Kuhlmann | 29th | Matthew Kuhlmann | 40th | 42nd |
| Third Basemen | Jaime Sweeney | Tied for 16th | Tim Andreacchio | 7th | 9th |
| Shortstops | Will Hill | Tied for 24th | Jack Wolfe | Tied for 19th | 28th |
| Left Fielders | Pat Titus | 7th | Pat Titus | Tied for 23rd | 11th |
| Center Fielders | Mike Hensley | 41st | Mike Hensley | Tied for 16th | 28th |
| Right Fielders | Curt Hollis | 24th | Matt Lutz | Tied for 20th | 20th |
| Starting Pitchers | Justin McCaffrey | 21st | Josh Bisson | 12th | 19th |
| Relievers | Danny Yanez | 18th | T.J. Matherne | 5th | 12th |
| Closers | Danny Yanez | 35th | T.J. Matherne | 17th | 20th |
