| Thursday, December 22nd, 2016 |
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| Signed SP William Howard to a 4-year contract extension worth a total of $8,000,000. |
| Wednesday, December 14th, 2016 |
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| Signed free agent MR José Rodríguez to a minor league contract. |
| Monday, November 28th, 2016 |
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| CL Mark Miller received a 1-year contract through automatic renewal worth a total of $500,000. | | SS Jun'ichi Ogura received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Hua-ding Gui received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Diogo Negreiros received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Troy Baker becomes a free-agent. | | RF Tony Rodríguez received a 1-year contract through automatic renewal worth a total of $500,000. | | C Gary Lawson received a 1-year contract through automatic renewal worth a total of $500,000. | | C Roland Mackey received a 1-year contract through automatic renewal worth a total of $500,000. | | SP William Howard received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Joe Wilkins received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Jeff Parks received a 1-year contract through automatic renewal worth a total of $500,000. | | 1B George Soucy received a 1-year contract through automatic renewal worth a total of $500,000. | | CL Naofumi Kouda received a 1-year contract through automatic renewal worth a total of $500,000. | | LF Steve McDonald received a 1-year contract through automatic renewal worth a total of $500,000. | | MR James Morris received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Jimmy Drake becomes a free-agent. | | MR Robert Williams received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Jon Schneider received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Eric Hastings received a 1-year contract through automatic renewal worth a total of $500,000. | | CF José Carlos Mata received a 1-year contract through automatic renewal worth a total of $500,000. | | LF Juan Carlos Ortíz received a 1-year contract through automatic renewal worth a total of $500,000. | | LF Bernardo Vélez received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Thad Miller received a 1-year contract through automatic renewal worth a total of $500,000. | | 1B Gerald Becker received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Harry Miller received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Ron Dorsey received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Martin Tucker received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Quincy Green received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Ben Hays received a 1-year contract through automatic renewal worth a total of $500,000. | | RF Roderick Gray becomes a free-agent. | | MR Kelvin Adams becomes a free-agent. | | MR Mark Scott becomes a free-agent. | | MR Bob Hendricks becomes a free-agent. | | 1B Ray Green becomes a free-agent. | | 3B Johnny Koch becomes a free-agent. | | 3B Gustavo López becomes a free-agent. | | SP Barry Randall becomes a free-agent. | | LF Drake Dickerson becomes a free-agent. |
| Friday, November 25th, 2016 |
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| RF Victor Bailey received a 1-year contract through arbitration worth a total of $3,250,000. | | LF Mike Watkins received a 1-year contract through arbitration worth a total of $750,000. |
| Wednesday, November 16th, 2016 |
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| Signed Víctor Hernández to a minor league contract with a signing bonus of $160,000. |
| Monday, November 14th, 2016 |
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| Signed Kamatari Inoue to a minor league contract with a signing bonus of $160,000. |
| Friday, November 11th, 2016 |
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| Signed Edgar Smith to a minor league contract with a signing bonus of $800,000. | | Signed Thomas Nicolle to a minor league contract with a signing bonus of $160,000. |
| Wednesday, November 9th, 2016 |
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| Signed Tom O'Day to a minor league contract with a signing bonus of $2,000,000. |
| Monday, November 7th, 2016 |
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| Drafted SP Tom O'Day in the 2016 first-year player draft (Round 1, Pick 1, 1st overall pick). | | Drafted RF Edgar Smith in the 2016 first-year player draft (Round 2, Pick 1, 28th overall pick). | | Drafted RF Edgar Smith in the 2016 first-year player draft (Round 2, Pick 1, 28th overall pick). | | Drafted SP Thomas Nicolle in the 2016 first-year player draft (Round 3, Pick 1, 50th overall pick). | | Drafted RF Víctor Hernández in the 2016 first-year player draft (Round 4, Pick 1, 74th overall pick). | | Drafted 2B Kamatari Inoue in the 2016 first-year player draft (Round 5, Pick 1, 98th overall pick). | | Drafted CL Jesús Ortíz in the 2016 first-year player draft (Round 6, Pick 1, 122nd overall pick). | | Drafted 3B Kaoru Agano in the 2016 first-year player draft (Round 7, Pick 1, 146th overall pick). | | Drafted RF Cyril Sarrazin in the 2016 first-year player draft (Round 8, Pick 1, 170th overall pick). | | Drafted 2B Eitoku Sasaki in the 2016 first-year player draft (Round 9, Pick 1, 194th overall pick). | | Drafted SP Rintaro Taketo in the 2016 first-year player draft (Round 10, Pick 1, 218th overall pick). | | Drafted RF Jason Lemay in the 2016 first-year player draft (Round 11, Pick 1, 242nd overall pick). | | Drafted SS Tsuneyo Matsuura in the 2016 first-year player draft (Round 12, Pick 1, 266th overall pick). |
| Sunday, November 6th, 2016 |
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| Executed the last optional contract year of MR Aurelio Morales. | | Voided the team option year(s) of SP Jimmy Drake. | | Released 2B Curt Dempsey. | | 2B Alec Garrett was designated for assignment and placed on waivers. | | LF Mike Watkins was designated for assignment and placed on waivers. | | SS Jeff Shelton was designated for assignment and placed on waivers. | | 3B Eric Williams was designated for assignment and placed on waivers. |
| Friday, November 4th, 2016 |
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| SP Ray Lester has executed his last optional contract year. | | MR Juan Velázquez has executed his last optional contract year. |
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