| Wednesday, December 14th, 2016 |
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| Signed free agent 3B Bryan Gardner to a 2-year contract worth a total of $3,400,000. |
| Wednesday, December 7th, 2016 |
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| Signed free agent SP Nathan Wilson to a 4-year contract worth a total of $57,000,000. |
| Monday, November 28th, 2016 |
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| 2B Herman Campbell becomes a free-agent. | | MR Howard Ellis received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Eugene Tuttle received a 1-year contract through automatic renewal worth a total of $500,000. | | SS Artie Carlson becomes a free-agent. | | 1B George Sanders becomes a free-agent. | | C Hikaru Miyake received a 1-year contract through automatic renewal worth a total of $500,000. | | 2B Rod Werrett received a 1-year contract through automatic renewal worth a total of $500,000. | | MR Jimmy Sheppard becomes a free-agent. | | CF Juan García received a 1-year contract through automatic renewal worth a total of $500,000. | | RF Jorge Hernández received a 1-year contract through automatic renewal worth a total of $500,000. | | MR António De Jesús received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Alfonso Cunningham received a 1-year contract through automatic renewal worth a total of $500,000. | | SP Juan Carlos Villalobos becomes a free-agent. | | SP Leonard Goebel becomes a free-agent. | | SP Héctor Reyes becomes a free-agent. | | MR Henry Thomas becomes a free-agent. |
| Friday, November 25th, 2016 |
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| CL Arturo Sandoval received a 1-year contract through arbitration worth a total of $4,410,000. | | MR Matt Walton received a 1-year contract through arbitration worth a total of $1,300,000. | | SS Dane Moore received a 1-year contract through arbitration worth a total of $8,925,000. | | CF Jesús Hernández received a 1-year contract through arbitration worth a total of $4,200,000. | | MR Ka-byong Ko was not offered arbitration, becomes a free agent. | | LF Noel Patton received a 1-year contract through arbitration worth a total of $800,000. | | LF Tim Duncan received a 1-year contract through arbitration worth a total of $7,000,000. | | SP Nolan Lyons received a 1-year contract through arbitration worth a total of $6,585,000. | | 3B Jacob Rowe was not offered arbitration, becomes a free agent. |
| Friday, November 18th, 2016 |
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| Signed Kyushichi Maruyama to a minor league contract with a signing bonus of $180,000. |
| Thursday, November 17th, 2016 |
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| Signed Mitsuhide Umaba to a minor league contract with a signing bonus of $140,000. |
| Wednesday, November 16th, 2016 |
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| Signed manager Dave Smith to a 4-year, $1,250,000 per year contract. | | Signed Christian Harris to a minor league contract with a signing bonus of $240,000. |
| Monday, November 14th, 2016 |
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| Signed Ryoichi Kiyomizu to a minor league contract with a signing bonus of $180,000. |
| Sunday, November 13th, 2016 |
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| Signed Ron Peterson to a minor league contract with a signing bonus of $170,000. |
| Saturday, November 12th, 2016 |
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| Signed pitching coach Masanobu Yoshida to a 5-year, $550,000 per year contract. |
| Friday, November 11th, 2016 |
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| Signed team doctor Seishiro Kimura to a 5-year, $650,000 per year contract. |
| Monday, November 7th, 2016 |
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| Drafted SS Mitsuhide Umaba in the 2016 first-year player draft (Round 1, Pick 17, 17th overall pick). | | Drafted SP Christian Harris in the 2016 first-year player draft (Round 2, Pick 16, 43rd overall pick). | | Drafted SS Kyushichi Maruyama in the 2016 first-year player draft (Round 3, Pick 18, 67th overall pick). | | Drafted C Ryoichi Kiyomizu in the 2016 first-year player draft (Round 4, Pick 18, 91st overall pick). | | Drafted SS Ron Peterson in the 2016 first-year player draft (Round 5, Pick 18, 115th overall pick). | | Released CF Misao Kokawa. | | CF Misao Kokawa got drafted by the San Francisco Earthquakes in the expansion draft. | | Drafted 3B Matt Wilkerson in the 2016 first-year player draft (Round 6, Pick 18, 139th overall pick). | | Drafted 3B Eric Smith in the 2016 first-year player draft (Round 7, Pick 18, 163rd overall pick). | | Drafted 2B Toshinobu Noro in the 2016 first-year player draft (Round 8, Pick 18, 187th overall pick). | | Drafted CF Jeff Williams in the 2016 first-year player draft (Round 9, Pick 18, 211st overall pick). | | Drafted SP Carl Longley in the 2016 first-year player draft (Round 10, Pick 18, 235th overall pick). | | Drafted 3B Ernest Parsons in the 2016 first-year player draft (Round 11, Pick 18, 259th overall pick). | | Drafted SS Ryan Gregory in the 2016 first-year player draft (Round 12, Pick 18, 283rd overall pick). |
| Friday, November 4th, 2016 |
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| 3B Salvador Salgado has executed his last optional contract year. | | MA Carlos Brown retires. | | Pitching Coach Dan Parent leaves the team, his contract was not renewed. | | Team Trainer Matt Watts leaves the team, his contract was not renewed. |
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